Index

_

__init__() (hidebound.core.connection.DaskConnection method) (hidebound.core.database.Database method) (hidebound.core.logging.ProgressLogger method) (hidebound.core.parser.AssetNameParser method) (hidebound.core.specification_base.SpecificationBase method) (hidebound.exporters.disk_exporter.DiskExporter method) (hidebound.exporters.exporter_base.ExporterBase method) (hidebound.exporters.girder_exporter.GirderExporter method) (hidebound.exporters.s3_exporter.S3Exporter method) (hidebound.server.extension.HideboundExtension method) _enforce_directory_structure() (hidebound.exporters.exporter_base.ExporterBase method) _export_asset() (hidebound.exporters.disk_exporter.DiskExporter method) (hidebound.exporters.exporter_base.ExporterBase method) (hidebound.exporters.girder_exporter.GirderExporter method) (hidebound.exporters.s3_exporter.S3Exporter method) _export_asset_chunk() (hidebound.exporters.disk_exporter.DiskExporter method) (hidebound.exporters.exporter_base.ExporterBase method) (hidebound.exporters.girder_exporter.GirderExporter method) (hidebound.exporters.s3_exporter.S3Exporter method) _export_content() (hidebound.exporters.disk_exporter.DiskExporter method) (hidebound.exporters.exporter_base.ExporterBase method) (hidebound.exporters.girder_exporter.GirderExporter method) (hidebound.exporters.s3_exporter.S3Exporter method) _export_dirs() (hidebound.exporters.girder_exporter.GirderExporter method) _export_file() (hidebound.exporters.disk_exporter.DiskExporter method) (hidebound.exporters.exporter_base.ExporterBase method) (hidebound.exporters.girder_exporter.GirderExporter method) (hidebound.exporters.s3_exporter.S3Exporter method)

_export_file_chunk() (hidebound.exporters.disk_exporter.DiskExporter method) (hidebound.exporters.exporter_base.ExporterBase method) (hidebound.exporters.girder_exporter.GirderExporter method) (hidebound.exporters.s3_exporter.S3Exporter method) _get_config_from_env() (hidebound.server.extension.HideboundExtension method) _get_config_from_file() (hidebound.server.extension.HideboundExtension method) _get_extension_parser() (hidebound.core.parser.AssetNameParser static method) _get_grammar() (hidebound.core.parser.AssetNameParser static method) _get_logger() (hidebound.core.logging.ProgressLogger static method) _get_parser() (hidebound.core.parser.AssetNameParser static method) _get_specification_parser() (hidebound.core.parser.AssetNameParser static method) _raise_field_error() (hidebound.core.parser.AssetNameParser static method) _schema (hidebound.core.config.Config attribute) (hidebound.core.config.Config.WebhookConfig attribute) (hidebound.core.connection.DaskConnectionConfig attribute) (hidebound.core.connection.DaskConnectionConfig.ClusterOption attribute) (hidebound.core.specification_base.ComplexSpecificationBase attribute) (hidebound.core.specification_base.FileSpecificationBase attribute) (hidebound.core.specification_base.SequenceSpecificationBase attribute) (hidebound.core.specification_base.SpecificationBase attribute) (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute) (hidebound.exporters.disk_exporter.DiskConfig attribute) (hidebound.exporters.exporter_base.ExporterConfigBase attribute) (hidebound.exporters.girder_exporter.GirderConfig attribute) (hidebound.exporters.s3_exporter.S3Config attribute) _to_filepaths() (hidebound.core.specification_base.SpecificationBase method)

A

access_key (hidebound.exporters.s3_exporter.S3Config attribute), [1] add_asset_id() (in module hidebound.core.database_tools) add_asset_name() (in module hidebound.core.database_tools) add_asset_path() (in module hidebound.core.database_tools) add_asset_traits() (in module hidebound.core.database_tools) add_asset_type() (in module hidebound.core.database_tools) add_file_traits() (in module hidebound.core.database_tools) add_relative_path() (in module hidebound.core.database_tools) add_specification() (in module hidebound.core.database_tools) api (hidebound.server.server_tools.EndPoints attribute)

api() (in module hidebound.server.api) api_key (hidebound.exporters.girder_exporter.GirderConfig attribute), [1] asset_name_fields (hidebound.core.specification_base.SpecificationBase attribute), [1] (hidebound.core.specifications.Raw001 attribute), [1] (hidebound.core.specifications.Raw002 attribute), [1] asset_type (hidebound.core.specification_base.ComplexSpecificationBase attribute), [1] (hidebound.core.specification_base.FileSpecificationBase attribute), [1] (hidebound.core.specification_base.SequenceSpecificationBase attribute), [1] (hidebound.core.specification_base.SpecificationBase attribute), [1] AssetNameParser (class in hidebound.core.parser)

B

bucket (hidebound.exporters.s3_exporter.S3Config attribute), [1]

build_dev_command() (in module cli) build_prod_command() (in module cli)

C

call_webhooks() (hidebound.core.database.Database method) channels (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute) cleanup() (in module hidebound.core.database_tools) cli module cluster_type (hidebound.core.connection.DaskConnection property) (hidebound.core.connection.DaskConnectionConfig attribute), [1] ComplexSpecificationBase (class in hidebound.core.specification_base) Config (class in hidebound.core.config)

Config.WebhookConfig (class in hidebound.core.config) container_id_command() (in module cli) coordinate (hidebound.core.specifications.Raw002 attribute) COORDINATE_INDICATOR (hidebound.core.parser.AssetNameParser attribute) COORDINATE_PADDING (hidebound.core.parser.AssetNameParser attribute) coordinates_begin_at() (in module hidebound.core.validators) create (hidebound.server.server_tools.EndPoints attribute) create() (hidebound.core.database.Database method) (in module hidebound.server.api) critical() (hidebound.core.logging.DummyLogger method) (hidebound.core.logging.ProgressLogger method)

D

dask (hidebound.core.config.Config attribute), [1] (hidebound.exporters.disk_exporter.DiskConfig attribute) (hidebound.exporters.exporter_base.ExporterConfigBase attribute), [1] (hidebound.exporters.s3_exporter.S3Config attribute) DaskConnection (class in hidebound.core.connection) DaskConnectionConfig (class in hidebound.core.connection) DaskConnectionConfig.ClusterOption (class in hidebound.core.connection) data (hidebound.core.config.Config.WebhookConfig attribute) Database (class in hidebound.core.database) debug() (hidebound.core.logging.DummyLogger method) (hidebound.core.logging.ProgressLogger method) default (hidebound.core.connection.DaskConnectionConfig.ClusterOption attribute) delete (hidebound.server.server_tools.EndPoints attribute) delete() (hidebound.core.database.Database method) (in module hidebound.server.api) delete_empty_directories() (in module hidebound.core.tools)

descriptor (hidebound.core.specification_base.ComplexSpecificationBase attribute) (hidebound.core.specification_base.FileSpecificationBase attribute) (hidebound.core.specification_base.SequenceSpecificationBase attribute) (hidebound.core.specification_base.SpecificationBase attribute), [1] (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute) DESCRIPTOR_INDICATOR (hidebound.core.parser.AssetNameParser attribute) destroy_dev_command() (in module cli) destroy_prod_command() (in module cli) DF (in module hidebound.core.database_tools) DFS (in module hidebound.core.tools) directory_to_dataframe() (in module hidebound.core.tools) DiskConfig (class in hidebound.exporters.disk_exporter) DiskExporter (class in hidebound.exporters.disk_exporter) docker_exec() (in module cli) DummyLogger (class in hidebound.core.logging)

E

EndPoints (class in hidebound.server.server_tools) enter_repo() (in module cli) error() (hidebound.core.logging.DummyLogger method) (hidebound.core.logging.ProgressLogger method) error_to_response() (in module hidebound.server.server_tools) error_to_string() (in module hidebound.core.tools) exclude_regex (hidebound.core.config.Config attribute), [1] exit_repo() (in module cli) export (hidebound.server.server_tools.EndPoints attribute) export() (hidebound.core.database.Database method) (hidebound.exporters.exporter_base.ExporterBase method) (in module hidebound.server.api)

ExporterBase (class in hidebound.exporters.exporter_base) ExporterConfigBase (class in hidebound.exporters.exporter_base) exporters (hidebound.core.config.Config attribute), [1] extension (hidebound.core.specification_base.ComplexSpecificationBase attribute) (hidebound.core.specification_base.FileSpecificationBase attribute) (hidebound.core.specification_base.SequenceSpecificationBase attribute) (hidebound.core.specification_base.SpecificationBase attribute), [1] (hidebound.core.specifications.Raw001 attribute), [1] (hidebound.core.specifications.Raw002 attribute), [1] EXTENSION_INDICATOR (hidebound.core.parser.AssetNameParser attribute)

F

fatal() (hidebound.core.logging.DummyLogger method) (hidebound.core.logging.ProgressLogger method) field (hidebound.core.connection.DaskConnectionConfig.ClusterOption attribute) FIELD_SEPARATOR (hidebound.core.parser.AssetNameParser attribute) file_traits (hidebound.core.specification_base.SpecificationBase attribute) (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute) filename_fields (hidebound.core.specification_base.SpecificationBase attribute), [1] (hidebound.core.specifications.Raw001 attribute), [1] (hidebound.core.specifications.Raw002 attribute), [1] filepath (hidebound.core.logging.ProgressLogger property)

FileSpecificationBase (class in hidebound.core.specification_base) format_config() (in module hidebound.server.server_tools) frame (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute) FRAME_INDICATOR (hidebound.core.parser.AssetNameParser attribute) FRAME_PADDING (hidebound.core.parser.AssetNameParser attribute) from_config() (hidebound.core.database.Database static method) (hidebound.exporters.disk_exporter.DiskExporter static method) (hidebound.exporters.girder_exporter.GirderExporter static method) (hidebound.exporters.s3_exporter.S3Exporter static method) from_json() (hidebound.core.database.Database static method) from_yaml() (hidebound.core.database.Database static method)

G

gateway_address (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_api_token (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_api_user (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_auth_type (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_cluster_options (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_config (hidebound.core.connection.DaskConnection property) gateway_max_workers (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_min_workers (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_proxy_address (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_public_address (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_shutdown_on_close (hidebound.core.connection.DaskConnectionConfig attribute), [1] gateway_timeout (hidebound.core.connection.DaskConnectionConfig attribute), [1] get_app() (in module hidebound.server.app) get_asset_graph() (in module hidebound.server.components) get_asset_id() (hidebound.core.specification_base.SpecificationBase method) get_asset_name() (hidebound.core.specification_base.SpecificationBase method) get_asset_path() (hidebound.core.specification_base.FileSpecificationBase method) (hidebound.core.specification_base.SequenceSpecificationBase method) (hidebound.core.specification_base.SpecificationBase method) get_button() (in module hidebound.server.components) get_config() (hidebound.server.extension.HideboundExtension method) get_config_error() (in module hidebound.server.server_tools) get_config_tab() (in module hidebound.server.components) get_configbar() (in module hidebound.server.components) get_connection_error() (in module hidebound.server.server_tools) get_dash_app() (in module hidebound.server.components)

get_data_for_write() (in module hidebound.core.database_tools) get_data_tab() (in module hidebound.server.components) get_datatable() (in module hidebound.server.components) get_dropdown() (in module hidebound.server.components) get_dummy_elements() (in module hidebound.server.components) get_file_traits() (hidebound.core.specification_base.SpecificationBase method) get_filename_traits() (hidebound.core.specification_base.SpecificationBase method) get_illegal_mode_command() (in module cli) get_image_height() (in module hidebound.core.traits) get_image_width() (in module hidebound.core.traits) get_info() (in module cli) get_initialization_error() (in module hidebound.server.server_tools) get_key_value_card() (in module hidebound.server.components) get_lut() (in module hidebound.core.tools) get_meta_kwargs() (in module hidebound.core.tools) get_name_patterns() (hidebound.core.specification_base.SpecificationBase method) get_num_image_channels() (in module hidebound.core.traits) get_progress() (in module hidebound.core.logging) (in module hidebound.server.server_tools) get_progressbar() (in module hidebound.server.components) get_read_error() (in module hidebound.server.server_tools) get_search_error() (in module hidebound.server.server_tools) get_searchbar() (in module hidebound.server.components) get_traits() (hidebound.core.specification_base.SpecificationBase method) get_update_error() (in module hidebound.server.server_tools) GirderConfig (class in hidebound.exporters.girder_exporter) GirderExporter (class in hidebound.exporters.girder_exporter)

H

handle_data_error() (in module hidebound.server.api) handle_json_decode_error() (in module hidebound.server.api) handle_key_error() (in module hidebound.server.api) handle_type_error() (in module hidebound.server.api) has_dense_coordinates() (in module hidebound.core.validators) has_uniform_coordinate_count() (in module hidebound.core.validators) headers (hidebound.core.config.Config.WebhookConfig attribute) height (hidebound.core.specifications.Raw001 attribute), [1] (hidebound.core.specifications.Raw002 attribute), [1] hidebound.core.config module hidebound.core.connection module hidebound.core.database module hidebound.core.database_tools module hidebound.core.logging module hidebound.core.parser module hidebound.core.specification_base module hidebound.core.specifications module hidebound.core.tools module

hidebound.core.traits module hidebound.core.validators module hidebound.exporters.disk_exporter module hidebound.exporters.exporter_base module hidebound.exporters.girder_exporter module hidebound.exporters.s3_exporter module hidebound.server.api module hidebound.server.app module hidebound.server.components module hidebound.server.extension module hidebound.server.extensions module hidebound.server.server_tools module HideboundExtension (class in hidebound.server.extension) host (hidebound.exporters.girder_exporter.GirderConfig attribute), [1] (hidebound.server.server_tools.EndPoints attribute)

I

image_id_command() (in module cli) include_regex (hidebound.core.config.Config attribute), [1] info() (hidebound.core.logging.DummyLogger method) (hidebound.core.logging.ProgressLogger method) ingress_directory (hidebound.core.config.Config attribute), [1] init (hidebound.server.server_tools.EndPoints attribute) init_app() (hidebound.server.extension.HideboundExtension method) initialize() (in module hidebound.server.api) is_attribute_of() (in module hidebound.core.validators) is_aws_region() (in module hidebound.core.validators) is_bucket_name() (in module hidebound.core.validators) is_cluster_option_type() (in module hidebound.core.validators) is_coordinate() (in module hidebound.core.validators) is_descriptor() (in module hidebound.core.validators) is_directory() (in module hidebound.core.validators) is_eq() (in module hidebound.core.validators) is_extension() (in module hidebound.core.validators)

is_file() (in module hidebound.core.validators) is_frame() (in module hidebound.core.validators) is_gt() (in module hidebound.core.validators) is_gte() (in module hidebound.core.validators) is_hidebound_directory() (in module hidebound.core.validators) is_homogenous() (in module hidebound.core.validators) is_http_method() (in module hidebound.core.validators) is_in() (in module hidebound.core.validators) is_legal_directory() (in module hidebound.core.validators) is_lt() (in module hidebound.core.validators) is_lte() (in module hidebound.core.validators) is_metadata_type() (in module hidebound.core.validators) is_not_missing_values() (in module hidebound.core.validators) is_one_of() (in module hidebound.core.validators) is_project() (in module hidebound.core.validators) is_specification_file() (in module hidebound.core.config) is_version() (in module hidebound.core.validators) is_workflow() (in module hidebound.core.validators)

J

json (hidebound.core.config.Config.WebhookConfig attribute)

L

label (hidebound.core.connection.DaskConnectionConfig.ClusterOption attribute) LEGAL_FIELDS (hidebound.core.parser.AssetNameParser attribute) line() (in module cli) liveness() (in module hidebound.server.app) local_config (hidebound.core.connection.DaskConnection property)

local_multiprocessing (hidebound.core.connection.DaskConnectionConfig attribute), [1] local_num_workers (hidebound.core.connection.DaskConnectionConfig attribute), [1] local_threads_per_worker (hidebound.core.connection.DaskConnectionConfig attribute), [1] log() (hidebound.core.logging.ProgressLogger method) logs (hidebound.core.logging.ProgressLogger property) lut_combinator() (in module hidebound.core.tools)

M

main() (in module cli) metadata_types (hidebound.exporters.disk_exporter.DiskConfig attribute) (hidebound.exporters.exporter_base.ExporterConfigBase attribute), [1] (hidebound.exporters.girder_exporter.GirderConfig attribute), [1] (hidebound.exporters.s3_exporter.S3Config attribute) method (hidebound.core.config.Config.WebhookConfig attribute) module cli hidebound.core.config hidebound.core.connection hidebound.core.database hidebound.core.database_tools hidebound.core.logging hidebound.core.parser hidebound.core.specification_base hidebound.core.specifications hidebound.core.tools hidebound.core.traits hidebound.core.validators hidebound.exporters.disk_exporter hidebound.exporters.exporter_base hidebound.exporters.girder_exporter hidebound.exporters.s3_exporter hidebound.server.api hidebound.server.app hidebound.server.components hidebound.server.extension hidebound.server.extensions hidebound.server.server_tools

N

name (hidebound.exporters.disk_exporter.DiskConfig attribute), [1] (hidebound.exporters.girder_exporter.GirderConfig attribute), [1] (hidebound.exporters.s3_exporter.S3Config attribute), [1]

num_partitions (hidebound.core.connection.DaskConnection property) (hidebound.core.connection.DaskConnectionConfig attribute), [1]

O

on_datatable_update() (in module hidebound.server.app) on_event() (in module hidebound.server.app) on_get_tab() (in module hidebound.server.app)

on_progress() (in module hidebound.server.app) option_type (hidebound.core.connection.DaskConnectionConfig.ClusterOption attribute) options (hidebound.core.connection.DaskConnectionConfig.ClusterOption attribute)

P

params (hidebound.core.config.Config.WebhookConfig attribute) parse() (hidebound.core.parser.AssetNameParser method) parse_json_file_content() (in module hidebound.server.server_tools) parse_specification() (hidebound.core.parser.AssetNameParser static method) port (hidebound.exporters.girder_exporter.GirderConfig attribute), [1] (hidebound.server.server_tools.EndPoints attribute) PORT (in module cli) pred_combinator() (in module hidebound.core.tools) prod_command() (in module cli) progress (hidebound.server.server_tools.EndPoints attribute)

progress() (in module hidebound.server.api) ProgressLogger (class in hidebound.core.logging) project (hidebound.core.specification_base.ComplexSpecificationBase attribute) (hidebound.core.specification_base.FileSpecificationBase attribute) (hidebound.core.specification_base.SequenceSpecificationBase attribute) (hidebound.core.specification_base.SpecificationBase attribute), [1] (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute) PROJECT_INDICATOR (hidebound.core.parser.AssetNameParser attribute) pull_command() (in module cli) push_command() (in module cli)

Q

quickstart_command() (in module cli)

R

Raw001 (class in hidebound.core.specifications) Raw002 (class in hidebound.core.specifications) read (hidebound.server.server_tools.EndPoints attribute) read() (hidebound.core.database.Database method) (hidebound.core.logging.ProgressLogger static method) (in module hidebound.server.api) read_json() (in module hidebound.core.tools) readiness() (in module hidebound.server.app) redact_hash (hidebound.core.config.Config attribute), [1]

redact_regex (hidebound.core.config.Config attribute), [1] region (hidebound.exporters.s3_exporter.S3Config attribute), [1] remove_command() (in module cli) remove_container() (in module cli) render_template() (in module hidebound.server.server_tools) request() (in module hidebound.server.server_tools) resolve() (in module cli) restart_command() (in module cli) root_id (hidebound.exporters.girder_exporter.GirderConfig attribute), [1] root_type (hidebound.exporters.girder_exporter.GirderConfig attribute), [1]

S

S3Config (class in hidebound.exporters.s3_exporter) S3Exporter (class in hidebound.exporters.s3_exporter) search (hidebound.server.server_tools.EndPoints attribute) search() (hidebound.core.database.Database method) (in module hidebound.server.api) (in module hidebound.server.server_tools) secret_key (hidebound.exporters.s3_exporter.S3Config attribute), [1] SequenceSpecificationBase (class in hidebound.core.specification_base) serve_stylesheet() (in module hidebound.server.app) setup_hidebound_directories() (in module hidebound.server.server_tools) specification (hidebound.core.specification_base.ComplexSpecificationBase attribute) (hidebound.core.specification_base.FileSpecificationBase attribute) (hidebound.core.specification_base.SequenceSpecificationBase attribute) (hidebound.core.specification_base.SpecificationBase attribute) (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute)

specification_files (hidebound.core.config.Config attribute), [1] SPECIFICATION_INDICATOR (hidebound.core.parser.AssetNameParser attribute) SpecificationBase (class in hidebound.core.specification_base) staging_directory (hidebound.core.config.Config attribute), [1] start() (in module cli) start_command() (in module cli) state_command() (in module cli) stop() (in module cli) stop_command() (in module cli) str_to_bool() (in module hidebound.core.tools)

T

target_directory (hidebound.exporters.disk_exporter.DiskConfig attribute), [1] time_string() (in module hidebound.core.tools) timeout (hidebound.core.config.Config.WebhookConfig attribute) to_filepaths() (hidebound.core.specification_base.FileSpecificationBase method) (hidebound.core.specification_base.SequenceSpecificationBase method)

to_prototype() (in module hidebound.core.tools) to_string() (hidebound.core.parser.AssetNameParser method) TOKEN_SEPARATOR (hidebound.core.parser.AssetNameParser attribute) traverse_directory() (in module hidebound.core.tools)

U

update (hidebound.server.server_tools.EndPoints attribute) update() (hidebound.core.database.Database method) (in module hidebound.server.api)

url (hidebound.core.config.Config.WebhookConfig attribute)

V

validate() (in module hidebound.core.validators) validate_assets() (in module hidebound.core.database_tools) validate_each() (in module hidebound.core.validators) validate_filepath() (hidebound.core.specification_base.SpecificationBase method) (in module hidebound.core.database_tools) version (hidebound.core.specification_base.ComplexSpecificationBase attribute) (hidebound.core.specification_base.FileSpecificationBase attribute) (hidebound.core.specification_base.SequenceSpecificationBase attribute) (hidebound.core.specification_base.SpecificationBase attribute), [1] (hidebound.core.specifications.Raw001 attribute) (hidebound.core.specifications.Raw002 attribute)

version_commit_command() (in module cli) VERSION_INDICATOR (hidebound.core.parser.AssetNameParser attribute) VERSION_PADDING (hidebound.core.parser.AssetNameParser attribute) version_variable() (in module cli)

W

warning() (hidebound.core.logging.DummyLogger method) (hidebound.core.logging.ProgressLogger method) webhooks (hidebound.core.config.Config attribute), [1] width (hidebound.core.specifications.Raw001 attribute), [1] (hidebound.core.specifications.Raw002 attribute), [1]

workflow (hidebound.core.config.Config attribute), [1] (hidebound.server.server_tools.EndPoints attribute) workflow() (in module hidebound.server.api) write_json() (in module hidebound.core.tools) write_mode (hidebound.core.config.Config attribute), [1]

X

x_tools_command() (in module cli)

Z

zsh_command() (in module cli) zsh_complete_command() (in module cli)

zsh_root_command() (in module cli) zshrc_tools() (in module cli)